Microarray-based Simultaneous Quantitation of Six Serum Tumor Markers Improves Cancer Diagnostics
DOI:
https://doi.org/10.12974/2311-8792.2014.02.02.1Keywords:
Cancer diagnostics, logistic regression, protein microarrays, ROC analysis, tumor markers.Abstract
Relative low sensitivity and specificity of the known protein tumor markers limit their application in cancer diagnosis and screening. Simultaneous use of their combination can improve diagnostic efficacy. The aim of the study was to estimate diagnostic characteristics of the hydrogel microarray-based test system “TM-Biochip” developed in EIMB RAS for a simultaneous quantitation of six tumor markers: alpha-fetoprotein (AFP), carcinoembryonic antigen (CEA), prostate-specific antigen (PSA total and free), neuron-specific enolase (NSE) and human chorionic gonadotropin (hCG) and to compare them with the diagnostic characteristics of systems used for estimating one tumor marker. Diagnostic performance of “TM-Biochip” system was evaluated using 170 serum samples from clinically confirmed cancer patients and control group patients. To evaluate the diagnostic efficiency of the test system we used linear regression and multiple logistic regression (LR), receiver operating characteristic (ROC) curve analysis and area under ROC curves (AUC). It was demonstrated that this new diagnostic system allows assessing the level of each marker and gives data comparable with the results obtained by measurement of each individual marker in a respective conventional ELISA system. ROC analysis and evaluation of diagnostic sensitivity and specificity of the system demonstrated that the new system did better than each of individual markers when classified: (1) cancer patients vs non-cancer patients; (2) patients with colorectal cancer (CRC) vs the other patients: patients with the other cancers and non-cancer patients; (3) patients with CRC vs patients with the other malignant tumors and (4) patients with prostate cancer (PC) vs patients with benign prostatic hyperplasia (BPH). In classification of the patients with PC and the patients with BPH AUC for the combination of six markers (LR6) was significantly higher than AUCs for each of individual markers, including the greatest AUC for PSAt (0.894 vs 0.771, p=0.032). On addition of such parameter as “age of patient” to the combination of six markers (LR7), AUC raised till 0.930 (p=0.01). Specificity at 90% sensitivity for PSAt, LR6 and LR7 accounted for 20 % (5.7-43.7), 60% (36.1-80.9) and 80.6 % (55.5-95.0), respectively. These results showed that “TM-Biochip” system is more efficient in revealing of cancer patients.
References
Voorzanger-Rousselot N, Garnero P. Biochemical markers in oncology. Part I: Molecular basis. Part II: Clinical uses. Cancer Treat Rev 2007; 33: 230-83. http://dx.doi.org/10.1016/j.ctrv.2007.01.008
Diamandis EP. Tumor markers: Past, Present and Future. In: Diamandis EP, Fritsche HA, Lilja H, Chan D, Schwarth M, Eds. Tumor Markers: Physiology, Pathobiology, Technology, and Clinical Applications. Washington: AACC Press 2002; pp. 3-8.
Ando S, Kimura H, Iwai N, Nomoto Y, Shima M, Ando M, et al. Optimal combination of seven tumor markers in prediction of advanced stage at first examination of patients with nonsmall cell lung cancer. Anticancer Res 2001; 21: 3085-92.
Lahousen M, Stettner H, Pickel H, Urdl W, Pürstner P. The predictive value of a combination of tumor markers in monitoring patients with ovarian cancer. Cancer 1987; 60: 2228-32. http://dx.doi.org/10.1002/1097- 0142(19871101)60:9<2228::AIDCNCR2820600921> 3.0.CO;2-N
Muzushima Y, Hirata H, Isumi S, Hoshino K, Konishi K, Morikage T, et al. Clinical significance of the number of positive tumor markers in assisting the diagnosis of lung cancer with multiple tumor marker assay. Oncology 1990; 47: 43-48. http://dx.doi.org/10.1159/000226783
Chechetkin VR, Prokopenko DV, Makarov AA, Zasedatelev AS. Biochips for medical diagnostics. Nanotechologies in Russia 2006; 1: 13-28.
Osipova TV, Ryabykh TP, Baryshnikov AYu. Diagnostic microchip: application in oncology. Russian Journal of Biotherapy, 2006; 5: 72-81.
Sun Z, Fu X, Zhang L, Yang X, Liu F, Hu G. A protein chip system for parallel analysis of multi-tumor markers and its application in cancer detection. Anticancer Res 2004; 24: 1159-66.
Rubina AYu, Kolchinsky A, Makarov AA, Zasedatelev AS. Why 3-D? Gel-based microarrays in proteomics. Proteomics 2008; 8: 817-31. http://dx.doi.org/10.1002/pmic.200700629
Ryabykh T, Osipova T, Dement'eva E, Savvateeva E, Konovalova E, Sookolova Z, et al. Biochip-based test-system for simultaneous quantitative determination of prostatespecific antigen (total and free forms) in blood serum. Russian Journal of Biotherapy 2006; 5: 49-57.
Osipova T, Ryabykh T, Rubina A, Dementieva E, Savvateeva E, Konovalova E, et al. Biochip-based testsystem for prostate cancer diagnostics. In: Egorov AM, Zaikov GE, Eds. New Aspect of Biotechnology and Medicine. New York: Nova Science Publishers, Inc. 2007; Chapter 3: pp. 15-28.
Osipova T, Sokolova Z, Ryabykh T, Karaseva V, Modorsky M, Matveev V, et al. Biochip-based Test-system for cancer Diagnostics. Simultaneous quantitation of total and free forms of prostate-specific antigen. Nanotechnology CRC Press, Boston 2008; 2: 30-33.
Dementieva EI, Rubina AYu, Darii EL, Dyukova VI, Zasedatelev AS, Osipova TV, et al. Protein microchips in quantitative assays for tumor markers. Dokl Biochem Biophys 2004; 395: 88-92. http://dx.doi.org/10.1023/B:DOBI.0000025553.98757.be
Savvateeva EN, Dementieva EI, Tsybul'skaya MV, Osipova TV, Ryabykh TP, Turygin AY, et al. Biological microchip for a simultaneous quantitative immunoassay of tumor markers in human serum. Bull Exp Biol Med 2009; 147: 679-83. http://dx.doi.org/10.1007/s10517-009-0591-2
Mirzabekov AD, Rubina AYu, Pan’kov SV. Composition for polymerizing immobilization of biological molecules and method for producing said composition. Patent Russian Federation No. 2216547, Bull Izobr No. 32 (in Russian). Patent PCT/RU 01/00420 WO 03/033539.
Zweig MH, Campbell G. Receiver-operating characteristic (ROC) plots: a fundamental evaluation tool in clinical medicine. Clin Chem 1993; 39: 561-77.
Ryabykh TP, Osipova TV, Sokolova ZA, Paklin NB. Assessment of diagnostic potentials of a commercial multiplex suspension microchip-based system for quantitative analysis of protein tumor markers. Journal of N.N. Blokhin Russian Cancer Research Center RAMS 2011; 22: 58-64.
Hensley ML. A step forward for two-step screening for ovarian cancer. J Clin Oncol 2010; 28: 2128-30. http://dx.doi.org/10.1200/JCO.2009.26.6346
Yurkovetsky Z, Skater S, Lomakin A, Nolen B, Pulsipher T, Modugno F, et al. Development of a multimarker assay for early detection of ovarian cancer. J Clin Oncol 2010; 28: 2159-66. http://dx.doi.org/10.1200/JCO.2008.19.2484
Farlow EC, Vercillo MS, Coon JS, Basu S, Kim AW, Faber LP, et al. A multy-analyte serum test for the detection of nonsmall cell lung cancer. Br. J. Cancer 2010; 103: 1221-28. http://dx.doi.org/10.1038/sj.bjc.6605865